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Highlights from 2008

Updated: 28 July 2008

RTP Class of '08
Main Page

Session Dates
25 May 2008 - 2 August 2008

A total of 13 students were selected to join the RTP Class of '08.


APPLICATION and INFORMATION


2008
Quick Links

Summer Session Index - 2008

Applicant Pool

RECRUITMENT: A web site was maintained with updates posted regularly. In addition, electronic project summaries were sent to a variety of professional societies for adding to ListServ postings and announcements, including direct recruitment through the Council on Undergraduate Research. A facebook page was created (RTP at NMNH) and notices posted on a variety of group pages in facebook and other social networking sites including Ning and status feeds through Twitter.

APPLICATION: A paper-based system was used to receive and review application documents. Documents received electronically were printed and filed in folders.

169 applications received.

13 participants.

Applicant Pool & Statistics
Semi-finalist List
Finalist List
Participants

Participant Statistics

Selection Summary

2008 Archive



Meet the 2008 participants
and read about their research projects.


Research Training Program
Class of '08

It has been a summer full of fun and adventure! Each day, we waded through the warm, humid, DC air and weathered sudden summer storms, trekked past the perfectly trimmed lawns of the White House and under the shadow of the Washington Monument in order to reach the marble steps of the National Museum of Natural History.

We entered through the clear glass doors of the "Staff Entrance", embarking on an unforgettable journey filled with gasps, laughter, and of course, pictures that fail to capture the essence and the memories of RTP.

We eagerly made our way through the Paleobiology department, breathing in the air, heavy with the dust of millions of years of knowledge, and looking hungrily at the jars containing chunks of mammoth meat in alcoholic brine. Then we "rocked out" in the Mineralogy department, gawked over the clarity and size of Type II diamonds in the Napoleon Necklace, and used a rock saw to cut pieces of the red bricks that lend their majestic hue to the Smithsonian Castle. The Entomology department offered a glimpse into the awe-inspiring biodiversity of beetles, especially when we compared the biggest beetle (Titanus giganteus) with the smallest (Cyrtinus pygmaeus). More terrific tours followed introducing us to colorful shells and brittle stars, Komodo dragons and gynandromorph birds, gutskin parkas and baby seal fur, aromatic gingers and blocks of wood. All of this, and yet, it was only a glimpse of the incredible collections in the NMNH.

When we took breaks from these tours, we "sat back and chatted" with Kevin de Quieroz on phylogenetics and species concepts and with Jon Coddington about the diversity of life and how to study it quantitatively; we examined the stone tools of the first Americans with Dennis Stanford, and bonded with former RTP-student-turned-curator Kris Helgen.

Some of us took a brief moment away from museum, only to find ourselves either in the middle of Wyoming digging for fossils, chatting away with colleagues at professional meetings, or collecting shark teeth from the Miocene and combing the shores along the warm waters of the Chesapeake Bay with Dave Bohaska.

We will always cherish these moments and all the connections we have made, taking the knowledge this program has bestowed upon us to begin incredible new adventures.

- RTP Class of '08

Read more notes from the students about their summer

 

 



Program Summary

This summer we welcomed the 29th class of students to join the Research Training Program (RTP) and recorded 28 years (1980 - 2008) of inspiring the next generation of scientists. It's been three sessions since the Program elected to decline financial support from the National Science Foundation, Research Experiences for Undergraduates Program, and since the evaluation of the RTP in 2005. This summer represents the full implementation of the 2005 recomendations from the NMNH community. Specifically, this summer tests the hypothesis: the same quality in recruitment, selection and curriculum will be maintained without peer review, as provided through NSF processes. NMNH science units, through designated committee members, can achieve the same quality and learning outcomes without NSF accountability or a supervising Program Director.

The Research Training Program is a ten-week, museum-based internship program featuring the unique opportunity for currently enrolled undergraduate students to explore research and study in the natural history sciences through unparalleled access to the collections, facilities and scientific community of the Smithsonian Institution's National Museum of Natural History in Washington, DC.

Established in 1910, the NMNH is home to one of the best assemblages of natural history collections and professional scientists. The community of more than 500 professionals includes NMNH scientists, as well as in-residence staff from U.S. Government affiliated agencies (U.S. Geological Survey (USGS), National Oceanic and Atmospheric Administration (NOAA), U.S.Department of Agriculture (USDA)) plus graduate students, research associates, collaborators and visiting professional. This community represents the world's largest collective of scientists dedicated to the study of natural and cultural history. The research environment features 126 million specimens of plants, animals, fossils, minerals, rocks, meteorites, and human artifacts from worldwide locations. The collections provide inspiration for new discovery and essential evidence for much of what we already know about the world around us, including documentation of changes in the Earth and climate, evolutionary history of plants and animals, and human origins and culture.

Since 1980 the Research Training Program has actively participated in the education and inspiration of the next generation of scientists interested in the biological, geological, and anthropological sciences. Encouraging confidence and competence in the research process is the cornerstone of this program.

Emphasis is placed on providing a first-time opportunity for undergraduate students, especially underrepresented minorities and persons with disabilities, to be involved in active participation in the natural history sciences including students who might not otherwise have the opportunity to join our scientific community and engage in research projects such as students from institutions where research opportunities in the natural history sciences are limited and locations where Smithsonian collaborations are not well established.

Under the mentoring guidance of one of Smithsonian's expert research scientists or in-residence research from an affiliated agency, participants pursued individualized, hypothesis-testing research topics in the biological, geological or anthropological sciences. Research findings were shared through a variety of media including electronic publications, poster presentations, written manuscripts, and oral presentations. Some students attended professional meetings and/or participated in field research sponsored by the RTP.

Through a predetermined schedule of events designed by committee representatives from each of the seven research departments, RTP participants came together several times each week to gather as a group and join in a series of lectures, discussions, workshops, social events, and collection tours that were also open to participation by other NMNH interns, staff and guests. Community interaction and communication were fostered through the Academic Resources Center (ARC), a common gathering space located on the Ground Floor of the Main Building, just down the corridor from the Constitution Avenue Lobby. Students also utilized several social networking groups in facebook including ARC, RTP at NMNH, and RTP Class of '08.


Research Training Program
2008


STAFF

Director: Mary Sangrey

Aid and Advisor: Elisa Maldonado

Discipline Representatives: John Brown (Entomology), Steve Cairns (Invertebrate Zoology), Liz Cottrell (Mineral Sciences), Bob Faden (Botany), Kris Helgen (Vertebrate Zoology), Gene Hunt (Paleobiology), Rich Vari (Vertebrate Zoology), and Melinda Zeder (Anthropology).




This summer session of the Research Training Program will be made possible through grants and donations from:

Latino Initiatives Fund The Honorable Max Berry
Alice Eve Kennington Internship Endowment
Smithsonian Women's Committee Internship Endowment
Robert Fri Internship Endowment
Dick Benson Endowment Fund
Bill and Jean Lane Internship Endowment

NMNH Office of the Director

In addition, a special anonymous donation was received (7 March 2008) to provide an opportunity for students in the RTP '08 to attend professional meetings during the summer program.

 

 

Research Abstracts
25 May 2008 - 2 August 2008

Read the student personal summaries about their summer

Paleotemperature Estimates and Carbon Isotope Stratigraphy
Across the Cretaceous Supergreenhouse Interval in Tanzania

Kristin Adams
University of Wisconsin, Whitewater
Whitewater, Wisconsin

Brian Huber, Ph.D.
Supervising Scientist
Department of Paleobiology

 

Paleotemperatures and paleooceanographic characteristics from the geologic past can be derived by stable isotope mass spectrometry on foraminifera. Multiple foraminifera species, both benthic and planktic, were picked from the Tanzania Drilling Project (TDP) Site 22 and sent to be analyzed with a mass spectrometer. The 133 m sequence of clay-rich siltstone drilled at Site 22 spans ~2 million years within the Turonian Stage, Cretaceous Period (~93-91 million years ago). Oxygen isotope paleotemperatures estimated from high latitudes and mid-bathyal paleodepths have shown this time period to be extremely warm; however, reliable low latitude data have been almost nonexistent before this point. The reason behind this lack of data is the inherent lack of pristinely preserved (glassy) samples in the low latitudes, but clay-rich marine sediments found in southeast Tanzania provide rich foraminiferal assemblages that are perfectly preserved. Oxygen isotopic data show a temperature range of 29°C-34°C for planktic foraminifera (surface-dwelling), approximately 3°C-5°C higher than the average sea surface temperature today. The data also show variation throughout the 2 m.y. time period, with a temperature decrease at the beginning of the time period (deeper depth), peak in temperatures at a sample depth of 60 to 80 meters, and a temperature increase near the end of the time period (shallow depth). The vertical profile of planktic species show the biserial and unkeeled species as being the most shallow inhabitants, double-keel species being in the middle, and the single-keel species as being the deepest dwellers. The benthic (or bottom-dwelling) profile shows interspecies oxygen and carbon isotope offsets among Lenticulina, Hoeglundina, and Gavelinella species due to different vital effects. Carbon isotopic data show the expected distinction between the planktic and benthic foraminifera, with the surface-dwelling, planktic species being present in an area of more primary productivity. Results from this study support the hypothesis that significantly elevated levels of carbon dioxide caused warming at low and high latitudes during the Turonain “Supergreenhouse Event”. The understanding of this global warming event may provide insights to computer models representing past and future climatic trends.

This research was supported by grants and donations to the Research Training Program.


An Evaluation of DNA Barcoding as a Method for Species Identification
in the Ant Genus Pheidole

Phillip Barden
arizona State University
Tempe, Arizona

Ted Schultz, Ph.D.
Supervising Scientist
Department of Entomology

 

The ant genus Pheidole is a hyper-diverse group found across six continents, with potentially over 1,000 species. Many of these ants exhibit worker dimorphism, that is, two morphologically different worker types (called major and minor workers) within single colonies. This, along with a wide assortment of morphotypes, makes identifying known, as well as unknown species, very difficult. The effectiveness of a relatively new method for species identification called DNA barcoding was evaluated both for associating worker morphotypes and identifying species in general. Leaf litter-dwelling Pheidole specimens from Guyana were collected and identified to species from morphology and then sequenced for the mtCOI barcode region. From these genetic data, it was found that DNA barcoding is a valuable tool for associating worker castes, as well as identifying new species. A major and minor worker from the species P. allarmata were successfully sequenced and were shown to be related not only from initial morphological identification, but from the genetic analysis as well, illustrating the value of DNA barcoding in associating worker castes. A total of 21 species were identified through morphology and 26 putative species were produced by the sequence data, showing a clear advantage to using DNA barcoding species identification along with morphological methods.

This research was supported by grants and donations to the Research Training Program.


Comparative ontogeny of compound leaves: deciphering the enigmatic
3-parted leaf of the bishopwood tree (Bischofia; Phyllanthaceae)

Ana Marcela Florez
Universidad Industrial de Santander
Bucaramanga, Colombia

Kenneth Wurdack, Ph.D.
Supervising Scientist
Department of Botany

 


Compound leaves have convergently evolved many times in angiosperms but few comparative studies have been done on their origin and development. Based on leaf architecture, there are three main compound leaf types: pinnate, palmate, and ternate. Pinnate forms have leaflets attached along an elongate axis; palmate have more than three leaflets attached at a single point; and ternate are 3-parted (trifoliate) from a single point. The origins of ternate leaves are unclear without phylogenetic hypotheses and closely related pinnate or palmate taxa from which to determine the direction of any changes. For example, ternate leaves might be derived by reductions from pinnate or palmate forms. There also have been suggestions that ternate leaves might even represent a different pattern of development. The origins of compound leaves can be revealed through their early ontogeny and the study of mutant leaves. This study focuses on the bishop tree (Bischofia javanica), the only compound-leaved Phyllanthaceae (formerly part of Euphorbiaceae s.l.), which has an unusual, slightly asymmetrical, ternate leaf with small domatia and theoid teeth. A pinnate derivation was previously proposed, based on limited 5-foliolate leaf mutants. The structure and development of Bischofia leaves was examined with SEM and histological observations of young shoot tips, and compared with the early ontogeny of other taxa (i.e., ternate Rhus aromatica, Staphylea trifolia, and Staphylea holocarpa and palmate Joannesia princeps). In Bischofia and Staphylea holocarpa, mutant mature leaves were found with mixed multi-leaflet pinnate and palmate forms. Development of extra leaflets in the latter taxon was acropetal in the manner of pinnate leaves. The leaves of Bischofia showed no further axis growth after the near simultaneous initiation of the lateral leaflets. Laminar domatia in Bischofia did not reveal any secretory regions that might indicate a reward for the mites they putatively house.

This research was supported by grants and donations to the Research Training Program.


Geological Significance of Blue Quartz in the U.S.

Thushara Gunda
University of Virginia
Charlottesville, Virginia

Michael Wise, Ph.D.
Supervising Scientist
Department of Mineral Sciences

 


Blue quartz has been identified in literature dating as far back as 1884. However, few studies have been conducted to discern the geological significance of its occurrence. Although rarely reported in the world, it is not uncommon to find blue quartz in certain regions of the United States. Nine samples of blue quartz were analyzed from localities in: Old Rag Mountain, VA (2), Flint Hill, VA (2), Roseland, VA, Cape Ann, MA (2), Oracle, AZ, and Llano, TX. Scanning electron microscope images revealed the presence of rutile needles in quartz in all six localities. However, the size of these needles (2-30 µm) makes them unlikely candidates for the Rayleigh scattering of light. Thus, the origin of blue color remains unresolved. Thin sections of blue quartz from Old Rag Mountain showed rutile needles predominantly oriented at 60° to each other, which is consistent with the hexagonal crystal system of quartz suggesting rutile exsolved from the quartz. Blue quartz occurs in host rocks of varying composition (quartz monzonite to anorthosite to syenogranite gneiss) and age (1450 m.y. to 388 m.y.) amongst the studied localities. Some researchers suggested that blue quartz could be used an indicator for regional metamorphism, while others suggest that blue quartz is restricted to granitic rocks. Our research revealed that blue quartz is more closely associated with anorogenic granite magmatism. Further studies should aim to resolve the geologic conditions at which rutile can exsolve from quartz. Recent studies have suggested titanium substitutions in quartz are temperature dependent (Wark and Watson, 2006); thus, attention should be given to the titanium-bearing blue quartz as a potential geothermometer.

This research was supported by grants and donations to the Research Training Program.


Instrumental studies of phonemic contrasts and sentence intonation in Unami

Maureen Hoffmann
Bryn Mawr College
Bryn Mawr, Pennsylvania

Ives Goddard, Ph.D.
Supervising Scientist
Department of Anthropology

 

This research examined phonological properties of the Algonquian language Unami, whose last speaker died in 2000. The purpose was to provide technical analysis of recordings using computer software that was not readily available at the time of the original field research (1966-1970). A freeware program (Praat) was used to analyze sound clips from digitized sound files of texts and word lists. Contrasts between phonemic short and phonemic long (geminate) consonants, specifically t, s, x, and š, were examined. (Phonemes are the minimal units of sound that contrast in a particular language and can therefore distinguish words.) For this research, the duration of the consonant (for the fricatives) and the duration of the stop closure (for t) were measured. It was discovered that there was no direct correlation between measurable duration and phonemic length. While most of the instances patterned such that the phonemic long consonants had longer durations than the phonemic short consonants, there was overlap in the mid-range values and there were several outliers. Patterns in sentence intonation (prosody) were also identified and described. In comparing the pitch contours of a variety of sentences, it was seen that these patterns did not always correlate with syntactic boundaries. This is evidence that it is possible for prosodic features to function at least partially independently from the grammar, which suggests the hypothesis that prosody can in part play a role in integrating discourse structures involving more than one sentence. Both the consonant length and sentence intonation data provide evidence for the complex relationship between linguistic structures and the phonetic features that express them. Further investigation of these features is required to fully understand how they function.

This research was supported by grants and donations to the Research Training Program.


Hybrid or Species: Unraveling the Taxonomic Status of Murdannia discreta (Commelinaceae), A Rare Plant from Thailand

Irene Liao
University of California, Berkeley
Berkeley, California

Robert B. Faden, Ph.D.
Supervising Scientist
Department of Botany

 


Murdannia (Commelinaceae) is a pantropical monocot genus that is comprised of nearly 50 species. Morphologically, the genus is characterized by leaves that are arranged in a spiral, a sessile lamina, and a supervolute unfolding pattern (Faden, 1998). Its most distinctive feature is the presence of 3 fertile stamens attached in front of the sepals alternating with 3 sterile stamens (staminodes) attached in front of the petals. Anatomically, Murdannia shows much variation, but some of the similarities include the presence of a nearly continuous hypodermis, patterned cuticle, and marginal sclerenchyma (Faden & Inman, 1996). Murdannia discreta, a rare plant that is nearly endemic to Thailand, resembles two widespread Asian species, M. edulis and M. japonica based on a comparison of ten morphological characters (Thitimetharoch et al., unpublished). This research aims to determine whether M. discreta is a distinct rare species or a possible hybrid between M. edulis and M. japonica. Using a mixture of traditional and modern techniques, plants from six populations of the three taxa (3 M. edulis, 1 M. discreta, 2 M. japonica) were compared in leaf anatomy, morphology, chromosomes, and flowering times. Thin leaf cross sections and scanning electron microscope (SEM) images do not reveal important differences between the plants while preliminary chromosome counts suggest a close relationship of all three taxa. Overlapping flowering times of the plants in the afternoon confirms the feasibility for hybridization to occur between M. edulis and M. japonica. Although the information collected from these observations are valuable, DNA sequences will ultimately be included in the study, further clarifying the relationships among these three taxa..

This research was supported by grants and donations to the Research Training Program.


Analysis of a Late Jurassic, Eggshell-rich Microsite
from the Big Horn Basin of Wyoming

Jonathan Mitchell
Appalachian State University
Boone, North Carolina

Matthew Carrano, Ph.D.
Supervising Scientist
Department of Paleobiolog

 

The Fox Mesa locality is an unusual microvertebrate site in the Morrison Formation (Late Jurassic) of Wyoming because it includes embryonic dinosaur bone and hundreds of thousands of eggshell fragments, but a paucity of aquatic taxa. Fossil embryos with eggshell are rare and poorly understood, especially in the Morrison, making this site a unique opportunity to study the reproductive biology of a specific taxon, and thus learn more of this long gone world. The Fox Mesa site was mapped and bulk sampled in blocks (in 1999, 2001, 2003, and 2006). Body fossils and eggshell fragments were sorted by block. The site was buried in a floodplain mudstone typical of the Morrison Formation, and the eggshell and bones are very poorly sorted and well preserved. Analysis of the embryonic body fossils reveals a large number of elements assignable to Theropoda. Specifically, some of the jaws preserve minute (< 1 mm) coelurosaur-like teeth, and cervical vertebrae exhibit characteristic evidence of pneumaticity. It is not yet clear whether this represents a known Morrison coelurosaur, or a new taxon. Diagenic calcite is present on the eggshell surfaces, and are all of a low, uniform curvature with some being "inside out". Surface morphology is therefore uninformative. In order to identify potentially informative microstructural features, and to test whether all the eggshells were from the same taxon, fragments from different blocks were embedded in epoxy and thin-sectioned. These thin-sections were analyzed under transmission, polarized light, and cathodoluminescent light microscopes. Fractured radial sections and acetic-acid-etched, polished sections of shells were imaged under an environmental scanning electron microscope. The ultrastructure of the eggshells preserves the following theropod synapomorphies: 1) both oblique and vertical tubular pore canals, 2) an unevenly upward-grading mammillary layer of acicular cystals, 3) a single, continuous second layer, and 4) a possible third, external layer. The thousands of eggshell fragments and hundreds of embryonic bones suggest an original life association. The concentration of fragments implies that this was either a continual nesting ground for these theropods, or that a large group of theropods all nested together. Either situation represents a unique window into this Jurassic ecosystem. Study of the Fox Mesa eggshell fragments has shown possible evidence for a new early coelurosaur, and opened up the study of reproductive strategies in Morrison theropods by assigning this eggshell type to a coelurosaur. Also, either explanation for the vast quantities of egg at the site—group nesting behavior or perennially occupied nests—is a rare phenomenon in non-avian theropod dinosaurs, previously discussed at only one other site in Portugal.

This research was supported by grants and donations to the Research Training Program.


Modeling Sustainability and Severe Weather Events in Mongolia

Teresa Nichols
University of Pittsburgh
Pittsburgh, Pennsylvania

J. Daniel Rogers, Ph.D.
Supervising Scientist
Department of Anthropology

 

Sustainability has always been a central factor in the long tradition of a nomadic pastoralist lifestyle in the Mongolian steppes. To understand how social complexity has developed in the region since the Bronze Age, it is necessary to examine the dynamics of the human-environment relationship. We used an agent-based simulation model called HouseholdWorld, developed by scientists at George Mason University in conjunction with archaeological research conducted by the National Museum of Natural History, to explore the interplay between ecology, herds, and humans in Mongolia. To better understand the human-environment dynamic, extreme weather events were researched and recreated in our model as a means of exploring adaptive capacity. Results indicate the importance of mobility and the delicate balance between the social and genetic benefits inherent in forming culture groups as opposed to problematic population clusters and competition for forage.

This research was supported by grants and donations to the Research Training Program.


Diversification of Wellerellinae brachiopods during the West Texan
Permian: A combined phylogenetic and morphometric approach

Andrew Rominger
Stanford University
Stanford, California

Peter Wagner, Ph.D.
Supervising Scientist
Department of Paleobiology

 

The diversity of life has long fascinated scientists. The theory of natural selection provides a unifying framework in which to consider the evolution of diversity through time; however, consensus is still lacking in our understanding of how organisms have explored their potential morphospaces in such a way to produce the plethora of species on Earth. The idea of a theoretical morphospace, and adaptive landscapes therein, provides quantitative rigor in addressing questions of how morphologic diversity evolves. But here again little consensus exists, even on model predictions of evolution given assumed adaptive scenarios. In the current project we seek to bring a phylogenetic perspective to the question of diversification within a theoretical morphospace, namely a generalized morphospace for pseudo-logarithmically expanding shells, in order to test hypotheses about how diversity evolves, whether it is similar to random diffusion, driven by adaptive "basins of attraction," or the result of genetic and developmental constraints on organism structure. Here we present preliminary results achieved towards this goal. Specifically, a phylogenetic tree based on 35 discrete morphologic multistate characters and stratigraphic occurrence was recreated for 46 species in the subfamily Wellerellinae (Brachiopoda: Wellerellidae). These species largely originated and went extinct in the Permian of West Texas. Change in whorl expansion rate was also calculated. The generalized morphospace will be forthcoming, as will an analysis of support for three different models of evolution: (1) evolution is the result of random diffusion, (2) evolution is driven by basins of attraction within the morphospace (i.e. adaptive peaks), and (3) genetic and developmental constraints determine extent and direction of diversification.

This research was supported by grants and donations to the Research Training Program.


Geographic variation in Cinclodes fuscus,
an ovenbird of the high Andes and Patagonia

Camilo Sanin
Universidad de Los Andes
Bogota, Colombia

R. Terry Chesser, Ph.D.
Supervising Scientist
Department of Vertebrate Zoology, Birds

 

Cinclodes fuscus is a widespread and common species of ovenbird (Furnariidae) that breeds from Tierra del Fuego to the northern Andes. Traditionally, C. fuscus has been considered a single species composed of nine subspecies, and its long and narrow range suggests the possibility of considerable genetic variation among populations. We used two mitochondrial genes to reveal discrete and geographically coherent groups of Cinclodes fuscus; surprisingly these groups were more closely related to other species of Cinclodes than to each other. We also found evidence for incomplete lineage sorting or hybridization between C. oustaleti and one group of C. fuscus.

This research was supported by grants and donations to the Research Training Program.