NMNH Home  |  What's New ?  |  Calendar of Events  |  Information Desk  |  Search

      
Research Training Program
Highlights from 2006

Updated: 5 August 2006

Smithsonian Institution
National Museum of Natural History

Research Training Program


APPLICATION and INFORMATION
Special 2006 Update


2006
Quick Links

Summer Session Index - 2006

A total of 17 undergraduate student are included in the RTP Class of '06, including 3 students from the Notre Dame partnership program.

Main Page - 2006

Session Dates
28 May 2006 - 5 August 2006

A total of 20 undergraduate students are included in the RTP Class of '06.

Applicant Pool

RECRUITMENT: Due to uncertainty about the program and limited budget, no recruitment posters were printed or distributed this year. Once the program was confirmed, notice about the program was sent to several professional societies and web lists.

APPLICATION: As a continuing result of a catastrophic web server failure last year, on-line application materials remained unavailable. A paper process, following old methods from 1997 were reinstated to administer application and review

172 applications were received.

20 students participated.

Applicant list
Semi-finalist list
Finalist list
Participants

2006 Archive



Meet the 2006 participants
and read about their research projects.


Research Training Program
Class of '06



Erin
Saupe

Introduction
Poster Presentation
Research Abstract
Project Summary
Letter of Gratitude
Summer Notes

Kimberly
Vann

Introduction
Poster Presentation
Research Abstract
Project Summary
Letter of Gratitude
Summer Notes


Read notes from the students about their summer


Program Summary

This summer we welcomed the 27th class of students to join the Research Training Program (RTP) and recorded 26 years (1980 - 2006) of inspiring the next generation of scientists. A total of 509 students have participated in the RTP!

The Research Training Program is a ten-week, museum-based internship program featuring the unique opportunity for currently enrolled undergraduate students to explore research and study in the natural history sciences through unparalleled access to the collections, facilities and scientific community of the Smithsonian Institution's National Museum of Natural History in Washington, DC.

Established in 1910, the NMNH is home to one of the best assemblages of natural history collections and professional scientists. The community of more than 500 professionals includes NMNH scientists, as well as in-residence staff from U.S. Government affiliated agencies (U.S. Geological Survey (USGS), National Oceanic and Atmospheric Administration (NOAA), U.S.Department of Agriculture (USDA)) plus graduate students, research associates, collaborators and visiting professional. This community represents the world's largest collective of scientists dedicated to the study of natural and cultural history. The research environment features 126 million specimens of plants, animals, fossils, minerals, rocks, meteorites, and human artifacts from worldwide locations. The collections provide inspiration for new discovery and essential evidence for much of what we already know about the world around us, including documentation of changes in the Earth and climate, evolutionary history of plants and animals, and human origins and culture.

Since 1980 the Research Training Program has actively participated in the education and inspiration of the next generation of scientists interested in the biological, geological, and anthropological sciences. Encouraging confidence and competence in the research process is the cornerstone of this program.

Emphasis is placed on providing a first-time opportunity for undergraduate students, especially underrepresented minorities and persons with disabilities, to be involved in active research participation in the natural history sciences including students who might not otherwise have the opportunity to engage in research projects such as students from institutions where research opportunities in the natural history sciences are limited.

Participants in the 2006 program were provided housing at George Washington University (International House), travel ($500 or costs), stipend ($3,000), plus funds to support additional, complementary research activities such at attending professional meetings and visiting field sites.

Under the mentoring guidance of one of Smithsonian's expert research scientists, participants pursued individualized, hypothesis-testing research topics in the biological, geological or anthropological sciences. Research findings were shared through a variety of media including electronic publications, poster presentations, written manuscripts, and in some cases (Anthropology, Paleobiology, and Mineral Sciences) oral presentations. To conduct their research, participants were given exceptional, full (24/7) and free access to all NMNH facilities and resources including the extensive collections, libraries and laboratories.

Through an active schedule of events, participants came together several times each week to gather as a group and join in an interactive series of lectures, discussions, workshops, field trips, social events, and collection tours highlighting the diversity of scientific disciplines, research techniques, and career choices available in the natural history sciences. Community interaction and communication were fostered through the Academic Resources Center (ARC), a community gathering space located on the Ground Floor of the Main Building, just down the corridor from the Consistitution Avenue Lobby.


Research Training Program
2006


STAFF

Director: Mary Sangrey

Aid and Advisor: Elisa Maldonado
Contributing Colleague: Lynn Copes




This summer the Research Training Program celebrated 26 years (1980 - 2006) of inspiring the next generation of scientists by hosting 20 very talented natural history undergraduate students for ten weeks (29 May - 5 August 2006).

Research Training Program

27 May 2006 - 5 August 2006


2006
Quick Links

Summer Session Index - 2006



APPLICATION and INFORMATION
Special 2006 Update

There were 172 applicants from 123 different colleges and universities including 45 international students representing 21 different countries, who competed to join this summer's session. Following a rigorous review and selection process, 20 students were selected. During their ten weeks in-residence at the National Museum of Natural History students pursued a variety of interesting and relevant natural history research topics under the guidance of a mentoring research scientist. In addition to their research, students participated in an active curriculum of lectures, behind-the-scenes tours, technique demonstrations, discussions, and field trips that focused on exploring natural history science and developing the skills necessary to become effective researchers and ambassadors of natural history studies.

Through these web pages you will find reports created by the RTP participants about their summer investigations, including their research abstract and presentation poster, presented to the Smithsonian community on Thursday, 3 August 2006 in Natural History's Third Floor Rotunda. In addition to communicating their research to scientific audiences, students learned to share their investigations with general audiences and the resulting project summaries are also included as are the letters of gratitude students prepared to thank those providing the financial assistance that supported their participation. Finally, students have recorded their "Favorite RTP Moment" from the ten weeks they spend with us as part of Smithsonian's research community.

It has been a summer full of fun and adventure. Here are a few comments from students:

"This program has been truly amazing. There are few opportunities available where you can get first-hand experience working on meaningful research with experts in the field." - Sara Marsteller

"As I stepped into the museum through the “staff only” entrance and was handed my binder and “visiting scientist” badge, I tangibly felt the importance of what I was beginning. Riding up the escalator and emerging into the rotunda, I was nearly struck breathless by the reality of it all. I could hardly believe that I was going to be doing research here, at the Smithsonian. That was my favorite RTP moment; the moment when it hit me that this was going to be the most incredible summer of my life." - Katie Faust

"Being an RTP student allowed me to experience things I would have never experienced otherwise. I think that, apart from the incredibly rewarding experience this was academically, the cultural exchange in everyday life situations would be what I have enjoyed most this summer. " - Juan Andres Martinez

"This is an amazing program and a once in a lifetime opportunity…it doesn’t get any better than this!" - Caleb McMahan

This summer session of the Research Training Program was made possible by grants and donations from:

Alice Eve Kennington Internship Endowment
Smithsonian Women's Committee Internship Endowment
Robert Fri Internship Endowment Notre Dame Partnership
Bill and Jean Lane Internship Endowment
Max Berry Donation Latino Initiatives Fund
NMNH Office of the Director


Natural History Museum   |   Smithsonian   |   SI Libraries

 

Research Abstracts
28 May 2006 - 5 August 2006

Read the student personal summaries about their summer

Reconstructing a Permian Tropical Forest:
Vegetational Compositions and Patterns of Herbivory

Jorge Alvarez
University of Puerto Rico, Mayaguez
Mayaguez, Puerto Rico

William DiMichele, Ph.D.
Supervising Scientist
Department of Paleobiology

Conrad Labandeira, Ph.D.
Supervising Scientist
Department of Paleobiology

In recent years the interest for the study of plant-insect interactions has risen in the scientific community. However, very little has been published on this about Early Permian floras. The late Paleozoic was a time of very drastic changes for Earth's climate, shifting from an Icehouse to a Greenhouse climate. This is the most recent model for such an event that is available for study. To have a better idea of what the ecosystem was like during such an event, we chose samples from four locations of the Colwell Creek Pond site of north-central Texas, which corresponds to this time period, and made qualitative and quantitative analysis of the flora. The site is composed by series of rock layers, called redbeds that occur throughout north-central Texas. During the Permian, this was the western tropical margin of the Supercontinent Pangea and the specimens found here are classic examples of an Early Permian biota. By analyzing and quantifying the insect interactions with this flora and comparing it to various other projects currently taking place in the United States, Brazil, and South Africa, it might be possible to establish a pattern for the herbivory of these insects. There were three dominant species in the flora of these four sites: Auritifolia waggoneri (common - 34.14% ), Walchian conifer type 1 (common - 34. 14%), Taeniopteris type 1(common - 25. 33 %). The majority of the specimens were rare, with only 1 or 2 counts in some cases. Out of all the specimens Auritifolia waggoneri showed the most damage, with 58.71% of the samples being affected. The other two affected were Taeniopteris type 1 (minimum damage) and conifers type 1 and 3 (with what appear to be galls). Very few other taxa were affected, but their count was so low that a significant count could not be achieved.

This research was supported by a grant from the Latino Initiatives Fund.

Ontogenetic Changes in Shell Microstructure of Freshwater Gastropods from
Lake Tanganyika (Cerithioidea, Paludomidae)

Emily Armgardt
Seattle University
Seattle, Washington

Ellen Strong, Ph.D.
Supervising Scientist
Department of Invertebrate Zoology`

Ancient lakes and their unique faunas present unparalleled opportunities for studying the patterns and processes of evolution and speciation. Lake Tanganyika, an ancient lake located in the Western Rift Valley of southeast Africa is known for hosting many endemic species including fishes, crabs, and gastropods. Unlike many other freshwater gastropods, the gastropods of Lake Tanganyika have highly decorated and thickened shells. West & Cohen (1996) have identified predator/prey co-evolution between gastropods and shell crushing crabs as the source for the unusual shells found in the lake. They quantified the number of cross-lamellar layers, up to four, in a sub-sample of species, and postulated that the additional shell layers impede predation by shell crushing. However, this study did not closely examine the ontogenetic sequence of the shell microstructure present in the shell. Eighteen different species were embedded in resin and examined with scanning electron microscopy to reveal the ontogenetic sequence of microstructure. The emergent pattern in the shell microstructure of many different species was a very simple larval shell, with additional variant cross-lamellar layers added during the juvenile stage, and then simplification of the layers when adult. This finding runs contrary to a predator/prey hypothesis because the additional layers claim to inhibit predation are not present in the adult.

This research was supported by grants and donations to the Research Training Program.

Body size evolution in deep-sea ostracodes

Julia Brown
Vanderbilt University
Nashville Tennessee

Gene Hunt, Ph.D.
Supervising Scientist
Department of Paleobiology

This study examined evolutionary trends in the body size of deep-sea ostracodes, and aimed to elucidate the mechanisms underlying Cope’s Rule: the tendency for body size to increase over time. Previous work has indicated that increases in body size of the ostracode genus Poseidonamicus were significantly correlated with decreases in deep-sea temperatures during the Cenozoic. Sixteen ostracode lineages from two sites on the Indian Ocean floor were examined to see if the same pattern appeared across additional sites and species. Ostracode body size (approximated by log-area) was measured using the software Image J and charted over a period of approximately 40 million years. The number of body size increases and decreases were counted between adjacent samples, and entire sequences were tested for directional trends using random walk models. Although ostracode body size showed intervals of both increase and decrease over time, there is evidence of an overall trend toward larger size, as body size increased over time in thirteen of sixteen lineages. Including both sites and all lineages, there were 38 body size increases between adjacent time periods, and 28 decreases, and the number of significant increases (13) nearly doubled the number of significant decreases (7). Concordant increases in body size emerge during the late Oligocene at DSDP site 253 and during the Pliocene at DSDP site 254. However, the exact patterns of body size evolution appear to differ between species and sites. This indicates that although a cooling global climate may be driving the general trend toward increasing body size in deep-sea ostracodes, there are many other local and species-specific factors capable of influencing body size evolution.

This research was supported by grants and donations to the Research Training Program.

F-OH- Substitution and Thermal Effects on the Crystal Structure of Pegmatitic Topaz

Madison Barkley
Mount Holyoke College
South Hadley, Massachusetts

Mike Wise, Ph.D.
Supervising Scientist
Department of Mineral Sciences

Pegmatites are intrusive igneous rocks that are characterized by unusually large grain sizes (> 20mm). There are two geochemical types of granitic pegmatites, LCT and NYF. LCT pegmatites are rich in lithium (Li), cesium (Cs), and tantalum (Ta) and are usually associated with orogenic granites. NYF pegmatites are related to anorogenic granites and are enriched in niobium (Nb), yttrium (Y), and fluorine (F). Topaz is a fluorine-rich mineral that commonly occurs in pegmatites; however, topaz is more common in NYF pegmatites than in LCT pegmatites. The focus of this project was to examine the changes in topaz crystal structure caused by F-OH- substitution and to investigate the structural changes due to temperature in order to determine if there are structural differences between topaz from LCT pegmatites and topaz from NYF pegmatites. In this study, 32 topaz samples from 26 localities were analyzed for unit-cell parameters, fluorine content, trace element content, and heating effects. Cell parameters were calculated from X-ray diffraction data, and fluorine content was obtained by electron microprobe analysis. As consistent with other topaz studies (Alberico et al. 2003), the b unit-cell dimension decreases with increasing F content. Also consistent was a less defined decreasing trend in the a unit-cell dimension as F content increases. No correlation was found between the c cell dimension and any other cell-dimension or compositional variation. Plots of the pegmatitic topaz from this study show distinct and separate linear trends between NYF and LCT pegmatites when comparing the b unit-cell dimension to the F content. Trace element analysis by X-ray fluorescence shows the presence of Ge, Cr, Pb, Ga, W, and Rb but yields no correlation between trace elements and unit-cell variations. Selected samples were chosen for a heat study. Samples were heated at 700oC for 1 hour. After heating, the unit-cell volume of the topaz generally decreased but no trends separating NYF pegmatites from LCT pegmatites were found.

This research was supported by grants and donations to the Research Training Program.

The Origins of Layered Carbonates in Peridotite Xenoliths

Bryan Cockrell
Princeton University
Princeton, New Jersey

Ed Vicenzi, Ph.D.
Supervising Scientist
Department of Mineral Sciences

Layered carbonates are found in lava-coated peridotite mantle xenoliths from the Sverrefjell basaltic volcano, which erupted through a glacier one million years ago during the Pleistocene and is located in the Bockfjord volcanic complex in Svalbard, Norway. Some carbonate globules are nearly identical to ones detected in Martian meteorite ALH84001 in size, shape, and chemical zoning and thus, the Sverrefjell depositions serve as a terrestrial analog of Martian aqueous alteration in ultramafic rocks. This investigation, based predominantly on two peridotite xenoliths, sought to characterize the variety of the carbonates' (and associated low-temperature silicates') textures and mineral chemistry in order to constrain their source fluid(s) and relative timing. The depositions, referred to as globules, were found as infilling at mineral grain boundaries and grain junctions. X-ray spectra, extracted from an energy dispersive detector mounted on a variable pressure scanning electron microscope (VPSEM), aided in the initial mineralogical characterization of the phases in globules from the two samples. Wavelength dispersive x-ray spectroscopy performed with an electron probe microanalyzer (EPMA) confirmed the fine-scale (submicrometer) intergrowth of silicates with carbonates in one sample and the presence of pure carbonates in the other. Several carbonates rich in Ca, Mg, and Fe were commonly observed while the most frequently observed silicate was an Fe-rich clay (saponite). Textures are consistent with carbonate deposition by hydrothermal waters as previously proposed. Multiple populations of carbonates and later silicate veins clearly indicate complex secondary mineralization by low-temperature fluids. Magmatically driven hydrothermal waters are likely responsible for dissolution of many of the veinlets as well as precipitation of the carbonates while ambient glacial groundwater may be the source for deposition of late saponitic clays.

This research was supported by grants and donations to the Research Training Program.

Hydrovolcanics on Mars: Comparison of Home Plate and Zuni Salt Lake, New Mexico

Megan Ennis
Morehead State University
Morehead, Kentucky

Tim McCoy, Ph.D.
Supervising Scientist
Department of Mineral Sciences

The Mars Exploration Rover mission objective is to find evidence of past water. While Opportunity’s landing site showed clear evidence in the water-lain sediments of the bedrock, Spirit has operated for more than two years before finding promising evidence for water. After traversing the Columbia Hills, Spirit approached the light-toned circular feature (~80m in diameter) known as “Home Plate”. In this work, we have tested whether Home Plate was formed by a hydrovolcanic eruption as a single event, or by eruption and subsequent aeolian reworking, by comparing the Mars deposits with various hydrovolcanic sites in New Mexico. To accomplish this goal, observations were made during one week of field work (June 11-June 16, 2006) completed in New Mexico at sites analogous to Home Plate. The goal of the field work was to document deposits of terrestrial hydrovolcanic maar volcanoes. Sites visited include Valles Caldera, White Rock Canyon, Montoso Maar, and most importantly Zuni Salt Lake. At Zuni Salt Lake a stratigraphic section, at a comparable scale to that of Home Plate (~2m), was measured and described. Samples were collected at these various sites for further analysis and later reference. Photographic images were taken along with descriptive field notes in order to document the features that were observed. These images were then compared to the images of Home Plate. We noted similarities, including low angle cross-bedding, accretionary lapilli, bomb sags, tephra beds, fine-grained finely layered units, alternating layers of coarse and fine clasts or tephra and vesicular basalt lag deposit cap. Differences, including collapse features, accidental (bedrock) material, and palagonite were also noted as being present at Zuni Salt Lake while absent at Home Plate. While each of the New Mexico sites demonstrates similar features to those seen at Home Plate, Zuni Salt Lake provides the most accurate terrestrial analog based on lateral extent and overall scale. Zuni Salt Lake is classified as a maar on the basis that slumping around the crater rim is evident and a large amount of accidental (bedrock) material is present. Lack of slumping and accidental material indicates that Home Plate is probably not a maar, but a tuff ring dominated by magma material. Low angle cross beds are found in both types of deposits; therefore, features found at Home Plate can result from a base surge produced by a hydrovolcanic eruption. The hydrovolcanic tuff ring model allows for all features observed at Home Plate, including the cross-bedding, to be accounted for within a single volcanic event, without requiring a later stage of wind-reworking. This style of eruption indicates that there once was water at or below the surface of Mars.

This research was supported by grants and donations to the Research Training Program.

Morphological and genetic variation in Amazonian antwrens

Katherine Faust
Louisiana State University
Baton Rouge, Louisiana

Terry Chesser, Ph.D.
Supervising Scientist
Department of Zoology, Birds

One important objective of systematic biology is to classify variation in the natural world into a meaningful evolutionary and taxonomic framework. In the field of ornithology, this has most often been done using qualitative analysis of plumage characters. These assessments, however, may not reflect natural evolutionary units (species or subspecies). Now, with new genetic and morphological techniques available, it is possible to quantitatively assess variation among and within species and determine whether current taxonomic designations do, in fact, reflect evolutionary history. This project evaluated genetic and morphological variation among subspecies of three Amazonian antwrens in the genus Myrmotherula: M. longipennis, (Long-winged Antwren) M. menetriesii, (Gray Antwren) and the species complex M. hauxwelli/guttata (Plain-throated/Rufous-bellied Antwrens). This is the first quantitative study of plumage variation and is among the first comprehensive studies of genetic variation in pan-Amazonian birds. All subspecies that were sequenced formed distinct genetic units, and female plumage variation was found to be distinctive within nearly all of these units. Only M. h. hauxwelli was difficult to distinguish on the basis of quantitative morphological characters. Furthermore, the subspecies M. hauxwelli clarior appears to contain two distinct genetic groups, and although no comparative genetic information was available, two distinct plumage groups were also identified within M. menetriesii berlepschi. These results emphasize the importance of independent quantitative examination of plumage in combination with genetic analyses. The concurrence between morphological and genetic data in these birds also mirrors findings from other emerging studies of tropical birds, whereas studies of temperate zone birds have often found plumage differences to be more pronounced than genetic differences.

This research was supported by grants and donations to the Research Training Program.

The White Plague: Skeletal Evidence of Tuberculosis

Paige Hamilton
University of Notre Dame
Notre Dame, Indiana

Dave Hunt, Ph.D.
Supervising Scientist
Department of Anthropology

Literature searches on the prevalence of tuberculosis lesions in 20th Century skeletal remains have revealed a disparity in expression of lesions on the ribs. This study intended to investigate the incidence of skeletal evidence of tuberculosis to clarify inconsistencies in the reported literature. A sample of 150 individuals was randomly-selected from three cause of death subgroups: pulmonary tuberculosis, non-specific tuberculosis, and non-tuberculosis. Results from this study show that a significant number of individuals with pulmonary tuberculosis (66%) and with non-specific TB (62%) displayed rib lesions, while only 16% of those dying from non-tuberculosis demonstrated this lesion type. Spinal lesion were also evaluated in this study. The frequency of both rib and spine lesions in individuals dying from pulmonary TB and non-specific TB was 38% and 36%, respectively, while only 8% of non-tuberculosis displayed both lesions. Although other possible diseases may respond in a similar way, the presence of lesions on the visceral side of the ribs and in conjunction with lesions on the anterior body of the spine would be highly diagnostic for an individual suffering from tuberculosis.

This research was supported by grants and donations to the Research Training Program.

Pipestone Provenance: Sourcing Prehistoric Pipestone Artifacts Within Museum Collections Using Reflectance Spectroscopy

Jayme Job
Minnesota State University, Moorhead
Moorhead, Minnesota

Eric Hollinger, Ph.D.
Supervising Scientist
Department of Anthropology

Sourcing archaeological artifacts has proven extremely useful in discerning prehistoric trading patterns and cultural contacts. This study widens the scale of many past sourcing projects by considering an entire museum’s pipestone collections rather than an individual object type or site. Advancements in the technology of geophysical sourcing, such as non-destructive reflectance spectroscopy, have made access to many previously restricted artifacts possible. By analyzing much of the pipestone collection housed by the Smithsonian’s National Museum of Natural History and National Museum of the American Indian using reflectance spectroscopy, existing notions of prehistoric trade on the plains may be detected and supported.

This research was supported by grants and donations to the Research Training Program.

Analysis of Ceramic Collections from Morona-Santiago, Southeast Ecuador

Sheena Ketchum
University of Notre Dame
Notre Dame, Indiana

Paulina Ledergerber, Ph.D.
Supervising Scientist
Department of Anthroplogy

This project is an analysis of the prehistoric ceramic collections excavated at two sites in Morona-Santiago, Southeast Ecuador. The analysis showed that the collections were made with very coarse grit and made with very diverse methods of decoration; there is also a high percentage of corrugated sherds present. These findings suggest that there was more than one culture using the sites and/or that the culture or cultures that constructed the vessels were not specialized at manufacturing pottery.

This research was supported by grants and donations to the Research Training Program.